[Omaha.pm] Glimmer output parser.
Jay Hannah
jay at jays.net
Wed Oct 7 21:25:25 PDT 2009
On Oct 7, 2009, at 7:56 PM, Sanjit Pandey wrote:
> I was wondering if anybody has parsed the output of glimmer3. I am
> looking for a existing code so that I don't have to write from
> scratch.
Some docs:
http://search.cpan.org/~cjfields/BioPerl-1.6.1/Bio/Tools/Glimmer.pm
and some sample code:
http://code.open-bio.org/svnweb/index.cgi/bioperl/view/bioperl-live/
trunk/t/Tools/Genpred.t
(The second half of the tests are for Glimmer, including Glimmer3.)
The bioperl-l mailing list is where all the world's BioPerl experts
hang out:
http://www.bioperl.org/wiki/Mailing_lists
I hope that helps,
j
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